In the first part of our blog series, we presented the basics of the GoBD, while the second part dealt with accounting, document storage and archiving. In this third part, we take a look at a topic that many retailers would prefer to ignore: procedural documentation. It sounds bureaucratic and dry – but it’s essential. And: those who set it up pragmatically will even benefit from it in everyday life.
Why procedural documentation is mandatory
The GoBD stipulates that your accounting must be traceable, unchangeable and auditable. This is exactly what a tax auditor examines – and for this he needs a kind of operating manual for your systems and processes. This user manual is the procedural documentation.
It describes how tax-relevant data is created, processed, stored and retained in your company. It must also clearly state who has access and which controls prevent manipulation. Without procedural documentation, an auditor simply cannot assess whether your accounting is correct. As a result, they can reject it and estimate turnover – almost always to your disadvantage.

Important: The obligation applies to all taxable companies, including small retailers, freelancers and one-person stores. Anyone who uses digital processes – be it sending invoices via PDF or an ERP system – must keep procedural documentation.
What happens if it is missing?
The consequences of non-existent or inadequate procedural documentation are serious:
- Formal deficiencies: Your accounting is considered improper.
- Additional estimates: The tax office estimates your sales or profits – and rarely interprets them to your advantage.
- Tax arrears & interest: Even small gaps can result in high additional claims.
- Fines or criminal proceedings: In serious cases, there is even the threat of criminal proceedings under tax law.
- More work in the audit: Without documentation, a tax audit takes longer, additional documents are requested and unnecessary stress arises.
In short: If you don’t have procedural documentation, you go into an audit unprepared – and risk serious disadvantages.
More than just a duty - real advantages
Even if it sounds like a rather annoying obligation, good procedural documentation has advantages in everyday life:
What belongs in the procedural documentation
The GoBD does not specify a fixed structure, but certain chapters have been established that every auditor expects. These are particularly relevant for online retailers:
Practical example: Returns in online business
A customer orders three items from your store. One product does not fit and is returned.
– Order & invoice: Are transferred to the store system and automatically transferred to ERP.
– Returns & refunds: The returns receipt is recorded in ERP and a credit note is generated and archived.
– Archiving: All documents (order, invoice, returns, refund) are stored in the DMS in an audit-proof manner.
– Linking: An auditor can trace the process seamlessly – from the sales order to the refund.
Such processes must be described in the procedural documentation.
How to start pragmatically
Many retailers hesitate because they think that procedural documentation is a thick folder full of paragraphs. In reality, it’s enough if your documentation is clear and up-to-date. That’s enough to start with:
You already fulfill the most important requirements. You can gradually refine the documentation later.
Checklist for your procedural documentation
- Company profile & system landscape recorded
- Processes and document flows described
- Roles & authorizations documented
- Archiving & immutability explained
- Changes & versions recorded in a traceable manner
- Responsibilities named and external partners listed
Conclusion
The procedural documentation is not an end in itself. It is the basis for ensuring that your accounting is auditable, traceable and legally compliant. If you ignore it, you risk back taxes, fines and sleepless nights. If, on the other hand, you set them up pragmatically, you benefit twice over: less risk – and more order in your own company.
Process documentation from JTL
Many software providers provide procedural documentation for their solutions. You also store the procedural documentation for the software you use as part of your procedural documentation. You can download the process documentation from JTL as a PDF in the JTL-Guide:
Document in your process documentation which version of JTL-Wawi you used in which period and save the corresponding version of the process documentation. As the documentation of updates is often forgotten in everyday work, updates from JTL-Wawi 1.10 are logged in the database. Your IT admin or service partner can help you to read this data from the database.
